| Cell types in abdominal organs |
ubergraph |
| Count how many publications use each dataset |
nasa-gesdisc-kg |
| Count the number of datasets by infectious agent in NDE. |
nde |
| Find a study related to influenza and links to other disease sources. |
ubergraph, nde |
| Find all diseases in NDE and the Mondo disease parent terms. |
federation |
| Find all influenza related studies in NDE. |
nde |
| Find genes associated with Alzheimer's disease |
prokn |
| Find genes expressed in pancreas acinar cells and regulating cell-matrix adhesion |
pankgraph, ubergraph |
| Find LINCS 1000 compounds that positively or negatively regulates at least one kinase gene, and is also perturbed in LINCS P100 |
prokn |
| Find phosphorylation sites that are likely to be downregulated by a perturbagen |
prokn |
| Find Properties and Relationships Associated with a Specific Gene(e.g., APOE) |
prokn |
| Find Properties and Relationships Associated with a Specific Protein(e.g., TP53) |
prokn |
| Find protein kinases in ProKN. |
prokn |
| Find science keywords most frequently cited by publications |
nasa-gesdisc-kg |
| Find science keywords most frequently cited by publications, matching labels against GCMD identifiers on Wikidata |
federation |
| Find treatment providers in metropolitan areas (RUCC codes 1-3) that offer at least 3 different services, showing the provider name, city name, state name, RUCC code, and the total number of services offered, ordered by the number of services in descending order. |
ruralkg |
| Find treatment providers located in cities that are in non-metropolitan counties (RUCC codes 6-9), showing the provider name, city name, RUCC code, and its description. |
ruralkg |
| Find treatment providers that offer counseling services in states that have counties with high RUCC codes (7-9, indicating more rural areas), showing the provider name, service name, state name, and RUCC code. |
ruralkg |
| Find treatment providers that offer substance abuse, drug, or alcohol-related services in cities located in non-metropolitan counties that are adjacent to metropolitan areas (RUCC codes 4-6), showing the provider name, city name, county name, RUCC code, and service name. |
ruralkg |
| Get 10 locations from the knowledge graph, their assoicated super locations, sub locations, and s2 cells |
sockg |
| Get all Harvest Fraction Samples and their corresponding attributes (date, expUnit, treatmentId, crop, growth stage, etc.) |
sockg |
| Get all non-NAN values from the class BiomassCarbohydrate and their associated metadata (ExpUnit, date, crop, etc.) |
sockg |
| Get all organisms associated with protein groups (via UniProt) |
evoweb, ubergraph |
| Get all sites and what field they are contained in along with their postal codes. |
sockg |
| Get all Soil Biological Samples and their corresponding attributes (date, lower and upper depth, expUnit, etc.) |
sockg |
| Get all Water Data Samples and their corresponding attributes (date, expUnit, treatmentId, Runoff, growth stage, etc.) |
sockg |
| Get disease-phenotype associations in OARD in concordance with Ubergraph (disease)-[disease has feature]-(phenotypic feature) |
oard-kg |
| Get diseases most strongly associated with a list of phenotypes |
oard-kg |
| Get diseases most strongly associated with a phenotype (Increased total monocyte count) |
oard-kg |
| Get phenotypes most strongly associated with a disease (Marfan syndrome) |
oard-kg |
| List 100 providers in RURAL-KG |
ruralkg |
| List 100 substances in RURAL-KG |
ruralkg |
| List All Diseases and Their Names and Sources |
prokn |
| List all labeled interactions |
ncipidkg |
| List all proteins with labels |
ncipidkg |
| List all resources in NDE and count the number of studies in each resource. |
nde |
| List assays by source from InvitroDB that are found in both ICE and ToxCast |
biobricks-ice |
| List datasets and their science keywords |
nasa-gesdisc-kg |
| List distinct judges |
scales |
| List neighbors of HDAC1 protein |
ncipidkg |
| List publications and the datasets they use |
nasa-gesdisc-kg |
| List publications by year and title |
nasa-gesdisc-kg |
| List SCALES ontology event labels |
scales |
| List services that are available on Saturday or Sunday |
dreamkg |
| List services that are provided in more than one language |
dreamkg |
| List software dependencies of versions of ffmpeg |
securechainkg |
| List the names of chemical entities and optionally their CAS RN and DSSTOXSID if available |
biobricks-ice |
| List things and their labels |
federation |
| List vulnerabilities in versions of ffmpeg |
securechainkg |
| Processes that output glucose |
ubergraph |
| Publications using a specific dataset, matching identifiers against DOIs on Wikidata |
federation |
| Scientific articles in Wikidata about a cell type that Ubergraph says is part of the abdomen |
ubergraph, wikidata |
| Show 100 triples |
federation |
| What is the adrenal gland part of? |
ubergraph |
| What is the average change in SOC stock (kg C ha-1 yr-1) in 0-30 cm soils? (5, 10, 15…)? This would require using equation above for Year 0 (=baseline year or first year of collection) and Year 5, 10, 15, etc…, then calculating the difference/# years. a. For each year, Delta SOC stock (kg ha-1) = Delta SOC stock (kg ha-1)yearX- Delta SOC stock (kg ha-1)baseline b. Average the Delta SOC stock (0-30cm) for the treatments of interest. |
sockg |
| What is the average increase in temperature from the first sample of an experimental unit for ghg flux samples. |
sockg |
| What is the average SOC stock (kg C ha-1) for 0-30 cm? a. For each field replicate sampled during the experiment (date) calculate SOC stock. * SOC stock (kg ha-1)= Organic C (g C/kg soil) * Bulk Density(g/cm3) * Soil depth(cm) * 100. 1ha=10,000m2 b. For each field replicate, sum kg ha-1 for all depth layers (0-5cm, 5-10cm, 10-30cm). If multiple soil increments measured between 0-30 cm, equation is the summation of calculation above for each increment. c. Average the SOC stock (0-30cm) for the treatments of interest. |
sockg |
| What is the average SOC Stock of available states |
sockg |
| What is the SOC stock, based on treatment Id, and what are the values used to find the SOC stock for each instance for GAJPCSR1_F1H2 on 1998-04-20? |
sockg |
| What is the Soil Organic Carbon (SOC) stock for each layer in experimental unit NDMAH3_T on 2008-04-04? Include Experimental Unit ID, Treatment ID, Date of Values, number the values used to calculate SOC stock, and the SOC stock value. |
sockg |
| Where is each field in the United States located (country, state) |
sockg |
| Which fields and their associated sites are located in Texas, and in which city are these fields found? Return the Field ID, Site ID, and Location with the struct (city, state abbreviation). |
sockg |
| Which management treatment (N rate, crop rotation, tillage, residue management) results in the greatest increase of SOC stocks (0-30cm, or o-100cm) after 15 years in rainfed sites? In irrigated treatments? This asks to rank the delta SOC stock calculations above. |
sockg |
| Which samples have a carbon concentration greater than or equal to 475 gC/kg? What additional information about these samples might help explain why their carbon concentration is so high? Include Unique ID, Treatment ID, Crop(s) used at Field, Plant Fraction use, Carbon Concentration value in your response. |
sockg |
| Who worked on the agcros dataset, what was their role, and what field did they work on? |
sockg |